Publications

Taylor C.A., Humphrey J.D..  2009.  Open problems in computational vascular biomechanics: Hemodynamics and arterial wall mechanics. Computer Methods in Applied Mechanics and Engineering. 198(45-46):3514-3523.

Schreck CF, Mailman M, Chakraborty B, O'Hern CS.  2012.  Constraints and vibrations in static packings of ellipsoidal particles. Physical Review E. 85(6)

Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S et al..  2012.  GENCODE: the reference human genome annotation for The ENCODE Project.. Genome Res. 22(9):1760-74.

Gee D.G, Humphreys K.L, Flannery J., Goff B., Telzer E.H, Shapiro M., Hare T.A, Bookheimer S.Y, Tottenham N..  2013.  A Developmental Shift from Positive to Negative Connectivity in Human Amygdala-Prefrontal Circuitry. Journal of Neuroscience. 33(10):4584-4593.

Negre CFA, Milot RL, Martini LA, Ding W, Crabtree RH, Batista. VS.  2013.  Efficiency of Interfacial Electron Transfer from Zn-Porphyrin Dyes into TiO2 Correlated to the Linker Single Molecule Conductance.. J. Phys. Chem. C 2013. 117: 24462-24470.. 117

Khurana E, Fu Y, Colonna V, Mu XJasmine, Kang HMin, Lappalainen T, Sboner A, Lochovsky L, Chen J, Harmanci A et al..  2013.  Integrative annotation of variants from 1092 humans: application to cancer genomics.. Science. 342(6154):1235587.

Papanikolaou S, O’Hern CS, Shattuck MD.  2013.  Isostaticity at Frictional Jamming. Physical Review Letters. 110(19)

Yip KY, Cheng C, Gerstein M.  2013.  Machine learning and genome annotation: a match meant to be? Genome Biol. 14(5):205.

Chen H, Kumah DP, Disa AS, Walker FJ, Ahn CH, Ismail-Beigi S.  2013.  Modifying the Electronic Orbitals of Nickelate Heterostructures via Structural Distortions. Physical Review Letters. 110(18)

Gerstein MB, Rozowsky J, Yan K-K, Wang D, Cheng C, Brown JB, Davis CA, Hillier LD, Sisu C, Li JJessica et al..  2014.  Comparative analysis of the transcriptome across distant species. Nature. 512(7515):445-448.

Botvinick MM, Cohen JD.  2014.  The Computational and Neural Basis of Cognitive Control: Charted Territory and New Frontiers. Cognitive Science. 38(6):1249-1285.

Di Achille P., Tellides G., Figueroa C.A, Humphrey J.D.  2014.  A haemodynamic predictor of intraluminal thrombus formation in abdominal aortic aneurysms. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 470

Ding W, Negre CFA, Vogt L, Batista VS.  2014.  High-conductance conformers in histograms of current-voltage characteristics. J. Phys. Chem.. 118(16)

Nelson K, Lau ET, Nagai D.  2014.  HYDRODYNAMIC SIMULATION OF NON-THERMAL PRESSURE PROFILES OF GALAXY CLUSTERS. The Astrophysical Journal. 792(1):25.

Bertrand T, Schreck CF, O'Hern CS, Shattuck MD.  2014.  Hypocoordinated solids in particulate media. Physical Review E. 89(6)

Ding W, Negre CFA, Palma JL, Durrell AC, Allen LJ, Young K, Milot RL, Schmuttenmaer CA, Brudvig G, Crabtree RH et al..  2014.  Linker Rectifiers for Covalent Attachment of Transition Metal Catalysts to Metal-Oxide Surfaces.. Chemphyschem. . 15(6)

Holford TR, Levy DT, McKay LA, Clarke L, Racine B, Meza R, Land S, Jeon J, Feuer EJ.  2014.  Patterns of Birth Cohort–Specific Smoking Histories, 1965–2009. American Journal of Preventive Medicine. 46(2):e31-e37.

Gaspari M., Churazov E., Nagai D., Lau E.T, Zhuravleva I..  2014.  The relation between gas density and velocity power spectra in galaxy clusters: High-resolution hydrodynamic simulations and the role of conduction. Astronomy & Astrophysics. 569:A67.

Ding W, Negre CFA, Vogt L, Batista VS.  2014.  Single Molecule Rectification Induced by the Asymmetry of a Single Frontier Orbital. Journal of Chemical Theory and Computation. 10(8):3393-3400.

Shen T, Papanikolaou S, O'Hern CS, Shattuck MD.  2014.  The statistics of frictional families. Phys. Rev. Lett.. 113

Rasia E, Lau ET, Borgani S, Nagai D, Dolag K, Avestruz C, Granato GLuigi, Mazzotta P, Murante G, Nelson K et al..  2014.  TEMPERATURE STRUCTURE OF THE INTRACLUSTER MEDIUM FROM SMOOTHED-PARTICLE HYDRODYNAMICS AND ADAPTIVE-MESH REFINEMENT SIMULATIONS. The Astrophysical Journal. 791(2):96.

Avestruz C, Lau ET, Nagai D, Vikhlinin A.  2014.  TESTING X-RAY MEASUREMENTS OF GALAXY CLUSTER OUTSKIRTS WITH COSMOLOGICAL SIMULATIONS. The Astrophysical Journal. 791(2):117.

Holford TR, Meza R, Warner KE, Meernik C, Jeon J, Moolgavkar SH, Levy DT.  2014.  Tobacco Control and the Reduction in Smoking-Related Premature Deaths in the United States, 1964-2012. JAMA. 311(2):164.

Zappitelli M, Greenberg JH, Coca SG, Krawczeski CD, Li S, Thiessen-Philbrook HR, Bennett MR, Devarajan P, Parikh CR.  2015.  Association of Definition of Acute Kidney Injury by Cystatin C Rise With Biomarkers and Clinical Outcomes in Children Undergoing Cardiac Surgery. JAMA Pediatrics. 169(6)

Anticevic A., Hu X., Xiao Y., Hu J., Li F., Bi F., Cole M.W, Savic A., Yang G.J, Repovs G. et al..  2015.  Early-Course Unmedicated Schizophrenia Patients Exhibit Elevated Prefrontal Connectivity Associated with Longitudinal Change. Journal of Neuroscience. 35(1):267-286.